{ "_id": "6a1e86681d7bb097a0a67649", "Package": "xpose4", "Title": "Diagnostics for Nonlinear Mixed-Effect Models", "Version": "4.7.4.9000", "Authors@R": "c(person(\"Andrew C.\",\"Hooker\",role=c(\"aut\",\"cre\",\"cph\"),email=\"andrew.hooker@uu.se\"),\nperson(\"Mats O.\",\"Karlsson\",role=c(\"aut\",\"cph\")),\nperson(\"Justin J.\",\"Wilkins\",role=\"aut\"),\nperson(\"E. Niclas\",\"Jonsson\",role=c(\"aut\",\"trl\",\"cph\")),\nperson(\"Ron\",\"Keizer\",role=\"ctb\",comment=\"functionality for bootstrap of GAM and SCM\"))", "Description": "A model building aid for nonlinear mixed-effects\n(population) model analysis using NONMEM, facilitating data set\ncheckout, exploration and visualization, model diagnostics,\ncandidate covariate identification and model comparison. The\nmethods are described in Keizer et al. (2013)\n, and Jonsson et al. 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"specific functions" ], "topics": [ "dv.vs.ipred" ] }, { "page": "dv.vs.ipred.by.cov", "title": "Dependent variable vs individual predictions, conditioned on covariates, for Xpose 4", "concept": [ "specific functions" ], "topics": [ "dv.vs.ipred.by.cov" ] }, { "page": "dv.vs.ipred.by.idv", "title": "Dependent variable vs individual predictions, conditioned on independent variable, for Xpose 4", "concept": [ "specific functions" ], "topics": [ "dv.vs.ipred.by.idv" ] }, { "page": "dv.vs.pred", "title": "Observations (DV) plotted against population predictions (PRED) for Xpose 4", "concept": [ "specific functions" ], "topics": [ "dv.vs.pred" ] }, { "page": "dv.vs.pred.by.cov", "title": "Dependent variable vs population predictions, conditioned on covariates, for Xpose 4", "concept": [ "specific functions" ], "topics": [ "dv.vs.pred.by.cov" ] }, { "page": "dv.vs.pred.by.idv", "title": "Dependent variable vs population predictions, conditioned on independent variable, for Xpose 4", "concept": [ "specific functions" ], "topics": [ "dv.vs.pred.by.idv" ] }, { "page": "dv.vs.pred.ipred", "title": "Observations (DV) are plotted against individual predictions (IPRED) and population predictions (PRED), for Xpose 4", "concept": [ "specific functions" ], "topics": [ "dv.vs.pred.ipred" ] }, { "page": "export.graph.par", "title": "Exports Xpose graphics settings to a file.", "concept": [ "data functions" ], "topics": [ "export.graph.par", "xpose.write" ] }, { "page": "export.variable.definitions", "title": "Exports Xpose variable definitions to a file from an Xpose data object.", "concept": [ "data functions" ], "topics": [ "export.variable.definitions" ] }, { "page": "GAM_summary_and_plot", "title": "GAM functions for Xpose 4", "concept": [ "GAM functions" ], "topics": [ "GAM_summary_and_plot", "xp.akaike.plot", "xp.cook", "xp.ind.inf.fit", "xp.ind.inf.terms", "xp.ind.stud.res", "xp.plot", "xp.summary" ] }, { "page": "gof", "title": "Structured goodness of fit diagnostics.", "concept": [ "generic functions", "specific functions" ], "topics": [ "gof", "gofSetup", "xpPage" ] }, { "page": "import.graph.par", "title": "Imports Xpose graphics settings from a file to an Xpose data object.", "concept": [ "data functions" ], "topics": [ "import.graph.par", "xpose.read" ] }, { "page": "import.variable.definitions", "title": "Imports Xpose variable definitions from a file to an Xpose data object.", "concept": [ "data functions" ], "topics": [ "import.variable.definitions" ] }, { "page": "ind.plots", "title": "Observations (DV), individual predictions (IPRED) and population predictions (PRED) are plotted against the independent variable for every individual in the dataset, for Xpose 4", "concept": [ "specific functions" ], "topics": [ "ind.plots" ] }, { "page": "ind.plots.wres.hist", "title": "Histograms of weighted residuals for each individual in an Xpose data object, for Xpose 4", "concept": [ "specific functions" ], "topics": [ 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"specific functions" ], "topics": [ "iwres.vs.idv" ] }, { "page": "kaplan.plot", "title": "Kaplan-Meier plots of (repeated) time-to-event data", "concept": [ "specific functions" ], "topics": [ "kaplan.plot" ] }, { "page": "make.sb.data", "title": "Make stacked bar data set.", "concept": [ "data functions" ], "topics": [ "make.sb.data" ] }, { "page": "npc.coverage", "title": "Function to plot the coverage of the Numerical Predictive Check", "concept": [ "PsN functions" ], "topics": [ "npc.coverage" ] }, { "page": "nsim", "title": "Extract or set the value of the Nsim slot.", "concept": [ "data functions" ], "topics": [ "nsim", "nsim<-" ] }, { "page": "par_cov_hist", "title": "Plot the parameter or covariate distributions using a histogram", "concept": [ "specific functions" ], "topics": [ "cov.hist", "parm.hist", "par_cov_hist", "ranpar.hist" ] }, { "page": "par_cov_qq", "title": "Plot the parameter or covariate distributions using quantile-quantile (Q-Q) plots", "concept": [ "specific functions" ], "topics": [ "cov.qq", "parm.qq", "par_cov_qq", "ranpar.qq" ] }, { "page": "par_cov_summary", "title": "Summarize individual parameter values and covariates", "concept": [ "data functions" ], "topics": [ "cov.summary", "parm.summary", "par_cov_summary" ] }, { "page": "parm.vs.cov", "title": "Parameters plotted against covariates, for Xpose 4", "concept": [ "specific functions" ], "topics": [ "parm.vs.cov" ] }, { "page": "parm.vs.parm", "title": "Plot parameters vs other parameters", "concept": [ "specific functions" ], "topics": [ "parm.vs.parm" ] }, { "page": "pred.vs.idv", "title": "Population predictions (PRED) plotted against the independent variable (IDV) for Xpose 4", "concept": [ "specific functions" ], "topics": [ "pred.vs.idv" ] }, { "page": "print.xpose.multiple.plot", "title": "Print an Xpose multiple plot object.", "topics": [ "print.xpose.multiple.plot" ] }, { "page": "randtest.hist", "title": "Function to create a histogram of results from the randomization 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